Versatile Vibrational Energy Sensors for Proteins
نویسندگان
چکیده
Abstract Vibrational energy transfer (VET) is emerging as key mechanism for protein functions, possibly playing an important role dissipation, allosteric regulation, and enzyme catalysis. A deep understanding of VET required to elucidate its in such processes. Ultrafast VIS‐pump/IR‐probe spectroscopy can detect pathways proteins. However, the requirement having a donor sensor installed simultaneously limits possible target proteins sites; increase their number we compare six IR labels regarding utility sensors. We these terms FTIR, signature donor‐sensor dipeptides different solvents. Furthermore, incorporated four PDZ3 assess capabilities more complex systems. Our results show that be used interchangeably, allowing free choice right label depending on system under investigation methods available.
منابع مشابه
Vibrational energy relaxation in proteins.
An overview of theories related to vibrational energy relaxation (VER) in proteins is presented. VER of a selected mode in cytochrome c is studied by using two theoretical approaches. One approach is the equilibrium simulation approach with quantum correction factors, and the other is the reduced model approach, which describes the protein as an ensemble of normal modes interacting through nonl...
متن کاملSimplified models for vibrational energy transfer in proteins
We consider the transfer of vibrational energy in proteins and derive a simplified model for the resonant energy exchange between different vibrational modes. We use the parameters of an earlier study [K. Moritsugu, et al., Phys. Rev. Lett. 85 (2000) 3970 ] to compare our predictions with the results of the molecular dynamics simulations, and reveal an excellent agreement. © 2007 Elsevier B.V. ...
متن کاملProbing vibrational energy relaxation in proteins using normal modes
Vibrational energy relaxation (VER) of a selected mode in cytochrome c (hemeprotein) in vacuum is studied using two theoretical approaches: One is the equilibrium simulation approach with quantum correction factors, and the other is the reduced model approach which describes the protein as an ensemble of normal modes coupled with nonlinear coupling elements. Both methods result in estimates of ...
متن کاملPiezoelectric Generators for Vibrational Energy Harvesting
In past times, energy harvesting used piezoelectric materials was very popular for new research. The devices shapes sizes and dimensions was tested, but was difficult to match power measurement as a device fabrication and other method which vary from paper to paper. In an standard comparison by changing the parameters , the dependence of on device dimension has been investigated. The devices li...
متن کاملSimulating Vibrational Energy Flow in Proteins: Relaxation Rate and Mechanism for Heme Cooling in Cytochrome c
The rate and mechanism of the kinetic energy relaxation of directly excited heme in cytochrome c was investigated using classical molecular dynamics simulation. The kinetic energy relaxation was found to be a biphasic exponential decay process with relaxation time constants of 1.5 ps for the fast process and 10.1 ps for the slow process. Approximately 60% of the kinetic energy relaxes on the sh...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Angewandte Chemie
سال: 2022
ISSN: ['1521-3773', '1433-7851', '0570-0833']
DOI: https://doi.org/10.1002/ange.202200648